Processing medline17n1200.xml.gz Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 112 INSERT INTO medcit (datecreated_month,owner,art_journal_journalissue_pubdate_year,datecompleted_year,art_journal_journalissue_pubdate_month,datecompleted_month,art_authorlist_completeyn,medlinejournalinfo_medlineta,art_journal_title,art_pagination_medlinepgn,daterevised_year,art_journal_journalissue_volume,art_pubmodel,art_journal_journalissue_citedmedium,status,daterevised_day,daterevised_month,datecompleted_day,art_arttitle,art_journal_journalissue_issue,medlinejournalinfo_country,datecreated_year,art_abstract_copyrightinformation,datecreated_day,medlinejournalinfo_nlmuniqueid,pmid_version,art_journal_issn,pmid,art_journal_issn_issntype,medlinejournalinfo_issnlinking) VALUES ('06','NLM','2016','2017','Dec','07','Y','Arthritis Rheumatol','Arthritis & rheumatology (Hoboken, N.J.)','2953-2963','2017','68','Print','Internet','MEDLINE','13','07','11','Myeloperoxidase-Antineutrophil Cytoplasmic Antibody (ANCA)-Positive Granulomatosis With Polyangiitis (Wegener''s) Is a Clinically Distinct Subset of ANCA-Associated Vasculitis: A Retrospective Analysis of 315 Patients From a German Vasculitis Referral Center.','12','United States','2016','© 2016, American College of Rheumatology.','22','101623795','1','2326-5205','27333332','Electronic','2326-5191') was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$1.handleError(QueryExecutorImpl.java:461) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27333379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27333460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27333469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27333534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27333926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27333927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27333929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27333930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27333931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27333932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27333933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27333956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27334789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27335804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27336907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27337711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27338998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27339988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27340971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27341166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27341173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27341275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27341284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27341355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27341383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27341454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27341529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27341530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27341559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27341658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27341798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27341986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27342980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27343991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27344315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27344330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27344331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27344332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27344333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27344344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27344362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27344577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27344623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27344677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27344947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27344955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27345171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27345243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27345291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27345321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27345369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27345420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27345505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27345688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27345727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27345933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27345945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27345948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27345963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27346052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27346146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27346147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27346291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27346299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27346345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27346360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27346425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27346625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27346641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27346705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27346751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27346930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27347372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27347650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27347688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27347692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27347754 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27347759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27347855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27347864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27347867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27347869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27348761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27349172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27349186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27349375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27349434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27349435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27349436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27349437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27349438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27349452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27349473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27349510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27349567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27349857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27350027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27350033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27350253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27350274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27350275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27350276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27350284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27350336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27350535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27350936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27351988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27352004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27352125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27352176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27352193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27352244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27352269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27352813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27352870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27352871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27352925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27352949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27352968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27352990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27353508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27353649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27353852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27353885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27354041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27354254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27354285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27354400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27354455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27354456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27354457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27354460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27354471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27354474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27354553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27354573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27355134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27355347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27355392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27355394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27355405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27355441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27355647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27355763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27355765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27355770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27355772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27355878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27355879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27355881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27356080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27356267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27356509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27356760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27356916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27356917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27356918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27356961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27357174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27357223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27357259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27357313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27357421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27357422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27357423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27357611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27357634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27357746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27357833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27357905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27357964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27358475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27359066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27359070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27359100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27359112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27359138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27359145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27359220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27359246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27359341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27362935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27363972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27364874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27365016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27365085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27365156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27365159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27365161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27365162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27365262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27365332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27365443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27365447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27365488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27365499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27365536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27366785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27366850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27366890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27366901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27366922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27366940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27367968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27368082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27368100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27368101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27368104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27368105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27368115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27368233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27368311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27368344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27368416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27368921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27368922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27368989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27369041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27369117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27369120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27369449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27369635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27369695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27369766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27370138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27370141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27370146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27370151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27370153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27370162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27370750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27370794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27370916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27370918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27370950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27371996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27372070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27372388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27372433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27372434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27372449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27372518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27372553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27372563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27372568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27372748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27372920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27372953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27373152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27373165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27373232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27373332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27373491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27373674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27373698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27373833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27373864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27373880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27373944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27373988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27374833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27375162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27375342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27375788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27376188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27376317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27376320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27376875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27376897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27376949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27376968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27377127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27377170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27377171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27377238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27377381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27377382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27377425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27377469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27377482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27377691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27377698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27377795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27377923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27377932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27378821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27379425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27379472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27379494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27379565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27379715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27379735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27379765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27379819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27379867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27379869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27379885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27380960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27381908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27382931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27383563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27383571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27383572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27383573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27383574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27383575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27383576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27383577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27383578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27383803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27383815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27383816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27383818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27383819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27384027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27384032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27384249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27384377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27384380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27384406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27384425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27384458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27384589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27384604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27384742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27384881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27384919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27384980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27385953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27386744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27386755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27386769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27386894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27387995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27388123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27388287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27388288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27388396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27388449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27388481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27388507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27388566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27388589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27388702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27388747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27388791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27388856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27388973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27389975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27390909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27391980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27392855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27393116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27393251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27393283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27393285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27393286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27393288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27393380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27393601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27393720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27393770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27393771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27393907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27394028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27394032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27394035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27394096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27394383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27394419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27394917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27394961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27395840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27396368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27396551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27396685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27396798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27397092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27397617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27397735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27398257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27398286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27398624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27398650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27398741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27398742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27398798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27398831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27398832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27398835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27398993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27399040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27399176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27399268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27399306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27399331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27399827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27399884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27399914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27399972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27400969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27401055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27401102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27401333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27401440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27401441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27401672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27401790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27401847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27401941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27401984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27402865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27403082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27403378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27403447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27403458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27403598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27403726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27403752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27403765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27403841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27404257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27404258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27404319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27404357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27404358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27404360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27404379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27404462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27404487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27404768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27404900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27404992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27404995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27405257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27405312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27405377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27405378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27405380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27405381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27405382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27405383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27405384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27405444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27405470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27405587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27405666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27405724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27406023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27406104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27406248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27406249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27406250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27406308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27406555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27406589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27406605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27406818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27406819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27406845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27407074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27407079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27407090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27407162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27408711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27409155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27409159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27409293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27409352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27409387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27409474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27409628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27409629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27409636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27409706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27410873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27411979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27412882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27413995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27414141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27414193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27414404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27414497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27414498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27414521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27414656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27414806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27414851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27414952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27414988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27415035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27415153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27415155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27415184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27415469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27415583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27415751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27415974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27415975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27416292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27416359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27416361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27416526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27416540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27416542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27416602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27416616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27416750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27416848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27416850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27416907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27416987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27416993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27417980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27418028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27418043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27418370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27418466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27418577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27418648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27418649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27418670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27418710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27418715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27418751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27418753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27418973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27419933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27420797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27421058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27421217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27421286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27421574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27421662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27421919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27422988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27423164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27423258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27423262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27423263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27423320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27423409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27423700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27423790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27423791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27423894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27423919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27424040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27424083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27424102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27424103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27424166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27424309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27424571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27424784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27424802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27424823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27424880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27425180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27425202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27425597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27426072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27426250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27426430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27426521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27426674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27426675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27426676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27426680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27426990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27427943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27428987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27429171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27429227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27429254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27429350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27429447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27429543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27429602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27429798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27429991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27429995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27429996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27429998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27429999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27430337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27430354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27430537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27430541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27430609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27431857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27432033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27432152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27432226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27432243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27432265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27432553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27433374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27433782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27433879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27433917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27433980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27434064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27434108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27434164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27434205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27434260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27434682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27434743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27434803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27434875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27435003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27435020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27435076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27435185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27435227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27435278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27435394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27435486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27435682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27435949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27436175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27436190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27436191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27436263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27436264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27436265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27436266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27436580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27436690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27436721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27436722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27436788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27436808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27436872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27437892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27438130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27438292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27438312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27438314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27438321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27438371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27438470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27438527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27438534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27438594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27438678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27438694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27438892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27439971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27440254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27440401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27440660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27440778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27440779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27440814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27440815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27440816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27440817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27440819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27440820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27440911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27441036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27441383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27441556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27441590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27441746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27441875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27442071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27442082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27442110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27442357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27442458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27442863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27442906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27443971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27444990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27445819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27446088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27446972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27447116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27447296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27447528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27447706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27447787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27447788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27447805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27447806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27447807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27447938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27447964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27448085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27448190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27448329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27448335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27448367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27448431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27448506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27448573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27448582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27448626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27448684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27448696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27448788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27448837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27449988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27450991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27451061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27451273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27451351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27451355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27451358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27451867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27451881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27451883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27452983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27453935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27454421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27455028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27455039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27455063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27455094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27455142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27455207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27455341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27455856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27456131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27456172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27456212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27456271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27456536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27456552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27456690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27456768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27456769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27456771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27456887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27457037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27457271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27457412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27457495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27457617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27457801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27457823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27458733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27459236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27459318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27459394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27459398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27459437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27459502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27459579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27459631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27459968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27459999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27460233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27460291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27460395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27460420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27460421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27460476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27460613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27460618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27460621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27460683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27460838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27460861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27460962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27460963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27461004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27461049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27461154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27461173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27461243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27461247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27461272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27461344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27461520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27462099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27462209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27462379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27462380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27463592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27463675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27463856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27463890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27464017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27464347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27464589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27464754 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27464833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27464996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27465880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27466936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27467119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27467202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27467247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27467751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27467752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27467774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27468111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27468116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27468117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27468137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27468268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27468749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27468838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27468850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27468859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27468897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27469020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27469131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27469132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27469133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27469139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27469205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27469270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27469352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27469429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27469435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27469532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27469598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27469977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27470030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27470124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27470129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27470130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27470185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27470220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27470510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27470534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27470599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27470602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27470603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27470662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27470665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27470666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27471042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27471047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27471111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27471206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27471600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27471603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27471857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27471858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27471859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27472900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27473079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27473093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27473119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27473156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27473472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27473519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27473562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27473715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27473729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27473858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27473904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27474140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27474180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27474219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27474370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27474862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27474943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27474944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27475975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27476033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27476149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27476173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27476646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27476982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27477913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27478928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27479170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27479186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27479329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27479358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27479529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27479704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27480978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27481055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27481058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27481130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27481149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27481293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27481450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27481510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27481553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27481606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27481834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27481838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27481937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27482123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27482150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27482194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27482470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27482532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27482547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27482646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27482699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27482723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27482869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27482892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27483126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27483212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27483363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27483364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27483366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27483478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27483479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27483482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27483484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27484276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27484277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27484310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27484444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27484445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27484446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27484447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27484578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27484698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27484699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27484739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27485755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27486075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27486133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27486686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27486809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27486851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27486965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27487009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27487073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27487083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27487158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27487318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27487912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27487951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27487952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27487953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27487954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27487955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27487956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27487957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27487958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27488983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27489420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27490884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27491023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27491024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27491405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27491487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27491528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27491693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27491878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27492874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27493980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27494047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27494149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27494150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27494302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27494394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27494414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27494428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27494429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27494430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27494508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27494514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27494900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27494992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27495144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27495242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27495244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27495255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27495266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27495308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27495323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27495324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27495374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27495377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27495815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27495938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27495973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27496263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27496334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27496548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27496912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27497068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27497160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27497176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27497192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27497492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27497531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27497597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27497679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27497796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27497870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27497887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27497917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27497921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27497922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27498089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27498170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27498304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27498377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27498558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27498608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27498620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27498688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27498722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27498749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27498771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27498957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27499833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27500075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27500183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27500311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27500412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27500461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27500835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27500911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27500942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27501941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27502041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27502058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27502195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27502196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27502441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27502700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27502779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27502837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27503968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27504199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27504594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27504637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27504842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27504987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27504997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27504999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27505067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27505181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27505192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27505422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27505441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27505672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27505681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27505686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27505692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27505847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27505848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27505865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27506164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27506318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27506338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27506430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27507109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27507286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27507673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27507739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27507759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27507825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27507850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27507872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27507875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27507877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27507880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27507901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27507904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27508418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27508489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27508501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27508862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27508937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27508941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27508950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27508962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27508963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27509846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27510837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27511115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27511219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27511453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27511459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27511461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27511462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27511764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27511813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27511814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27511820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27511899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27512113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27512924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513584 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27513973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27514027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27514074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27514076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27514396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27514404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27514448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27514481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27514486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27514912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27515994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27516073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27516359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27516450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27516452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27516583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27516594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27516730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27517467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27517487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27517488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27517527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27517867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27517869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27517870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27517946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27517947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27517948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27517949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27517950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27518780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27519367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27519371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27519381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27519384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27519387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27519388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27519394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27519396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27519462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27519463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27519464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27519522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27519630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27520772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27521190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27521285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27521567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27521686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27521719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27521723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27521979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27521980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27522064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27522227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27522239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27522360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27522578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27522658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27522659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27522663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27523302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27523583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27523921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27523922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27524110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27524247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27524377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27524555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27524876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27525316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27525413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27525440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27525673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27526005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27526105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27526395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27526720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27526871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27526991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27526998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27526999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27527925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27528113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27528123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27528599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27528616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27528719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27528723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27528726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27528729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27528730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27528760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27529180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27529192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27529318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27529323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27529418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27529560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27529634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27529700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27529745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27529809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27529818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27530891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27531024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27531036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27531038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27531166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27531312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27531597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27531604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27531649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27531844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27531909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27531946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27532149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27532522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27532609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27533115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27533245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27533299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27533620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27533742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27533882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27534273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27534377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27534382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27534416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27534510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27534517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27534698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27534904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27534980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27535926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27536927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27537931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27538120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27538185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27538345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27538408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27538456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27539027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27539068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27539202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27539216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27539247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27539393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27539402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27539489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27539668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27539671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27539782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27539844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27540134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27540135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27540136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27540140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27540559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27540683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27541578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27541603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27541610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27541611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27541614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27541615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27541616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27541811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27541827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27541836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27542077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27542082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27542263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27542345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27542508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27542517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27542518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27542591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27542653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27542854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27543934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27544246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27544284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27544423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27544588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27544589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27544781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27544825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27544840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27544879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27544881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27544895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27545071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27545277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27545308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27545443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27545444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27545668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27546978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27547023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27547105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27547159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27547778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27547790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27547922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27548026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27548215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27548300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27548879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27549029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27549073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27549115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27549116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27549193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27549308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27549319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27549337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27549585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27549632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27549634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27550212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27550353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27550398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27550552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27550723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27550799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27550804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27550813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27550889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27551891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27552170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27552352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27552723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27552964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27552966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27553978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27554292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27554473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27554483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27554615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27554670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27554764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27555091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27555111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27555219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27555285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27555286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27555309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27555356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27555487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27555719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27556937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27557430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27557476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27557591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27557704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27557811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27557812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27557991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27558981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27559288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27560451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27560644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27560830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27560936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27561274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27561275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27561662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27561791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27561809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27561971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27561972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27561983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27561984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27562052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27562068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27562209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27562376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27562385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27562461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27562463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27562616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27562671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27562762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27562775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27562784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27562879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27563061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27563092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27563170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27563728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27564860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27565000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27565027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27565130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27565197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27565279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27565438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27565459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27565757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27565834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27565997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27566046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27566138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27566146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27566228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27566315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27566400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27566443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27566466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27566531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27566711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27566712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27566914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27567999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27568194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27568206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27568225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27568231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27568232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27568268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27568310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27568311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27568329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27568470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27568473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27568812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27568818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27568819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27569560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27569562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27569594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27569657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27569677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27569763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27569854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27569903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27569920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27569921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27569925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27569994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27569995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27570925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27571179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27571193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27571315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27571338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27571435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27571483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27571536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27571747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27571989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27572275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27572514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27572617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27572702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27572717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27572727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27572805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27572945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27573121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27573167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27573264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27573281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27573388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27573501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27573590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27573628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27573629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27573633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27573654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27573661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27573785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27573876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27575283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27575385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27575565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27575974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27576001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27576010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27576190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27576483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27576516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27576519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27576566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27576573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27576674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27576733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27576734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27576759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27576763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27576940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27577052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27577093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27577186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27577546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27577547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27577580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27577622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27577872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27578010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27578111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27578132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27578249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27578257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27578305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27578390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27578419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27578753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27579525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27579531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27579566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27579710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27579717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27579856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27579910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27580179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27580364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27580635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27580847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27580848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27580942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27581089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27581147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27581174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27581343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27581836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27582099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27582125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27582370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27582513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27582514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27582516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27582517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27582518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27583822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27584685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27584686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27584725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27584799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27584825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27584943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27585945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27586832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27587066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27587067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27587344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27587370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27587380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27587381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27587382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27587384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27587385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27587497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27587719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27588278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27588443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27588486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27588518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27588580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27588598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27588733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27589213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27589330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27589385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27589538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27589601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27589669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27589986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27590997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27591095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27591547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27591551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27591576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27591735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27592119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27592370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27592397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27592402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27592680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27592682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27592800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27592822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27592823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27593166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27593176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27593182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27593193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27593205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27593338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27593384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27593420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27593476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27593477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27593513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27593522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27594443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27594528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27594560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27594722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27594814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27594904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27594927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27595995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27596230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27596835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27596852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27596942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27596950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27597141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27597289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27597637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27597661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27597798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27597897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27597929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27597984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27598037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27598228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27598827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27598891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27599458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27599521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27599545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27599640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27599658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27599665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27599777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27599782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27599897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27600255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27600259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27600372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27600453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27600516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27600575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27600636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27600683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27600687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27600688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27600767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27601076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27601138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27601158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27601210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27601244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27601371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27601432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27601508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27601544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27601552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27601553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27602429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27602518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27602598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27603222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27603432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27603796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27603931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27604096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27604153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27604310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27604405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27604527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27604528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27604611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27604612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27604725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27604996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27604998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27605714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27606321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27606322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27606323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27606324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27606502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27606774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27606893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27607409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27607474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27607476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27607480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27608173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27608445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27608501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27608529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27608733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27608859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27608977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27609024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27609243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27609433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27609439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27609520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27609545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27609622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27609828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27610403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27610573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27610598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27610643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27610927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27610942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27611013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27611095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27611479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27611491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27611617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27611620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27611765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27611766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27611767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27611808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27611904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27612001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27612017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27612019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27612172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27612181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27612184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27612186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27612195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27612282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27612300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27612330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27612592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27612986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27613128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27613155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27613339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27613917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27614151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27614221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27614225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27614672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27614914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27615385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27615388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27615400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27615730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27615812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27615813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27615814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27615815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27615816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27615817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27615818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27616006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27616012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27616048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27616157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27616205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27616707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27616780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27616809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27616937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27616975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27617033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27617202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27617269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27617270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27617305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27617337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27617343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27617442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27617659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27617782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27617850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27617909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27617932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27618203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27618260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27618366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27618557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27618644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27618652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27618662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27618740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27618741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27618742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27618867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27619234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27619561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27620999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27621555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27622982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27623870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27624979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27625736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27626103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27626199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27626380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27626617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27626654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27626700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27627135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27627575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27627784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27628044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27628078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27628292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27628319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27628320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27628582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27628655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27628678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27628896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27629158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27629349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27629384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27629697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27629780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27629781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27629893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27629894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27629895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27629896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27630088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27630126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27630717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27631159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27631334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27631335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27631408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27631534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27631591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27631610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27631845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27631957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27631963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27631978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27632220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27632223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27632347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27632349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27632392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27632403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27632429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27632432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27632470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27632589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27632932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27633999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27634950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27635025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27635054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27635217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27635523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27635771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27636113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27636117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27636200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27636235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27636396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27636545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27636561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27636569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27636733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27636830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27636831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27636899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27637097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27637205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27637575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27637723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27637912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27638128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27638132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27638133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27638418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27638450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27638603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27638894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27638896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27638897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27638898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27638899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27638900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27638903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27638919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27639059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27639271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27639294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27639497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27639608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27639857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27639877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27639956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27639981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27639989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27640987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27641001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27641100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27641149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27641157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27641367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27641543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27641618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27641647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27641674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27641686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27641829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27642068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27642071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27642134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27642159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27642161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27642180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27642195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27642196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27642254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27642263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27642271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27643926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27644004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27644057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27644257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27644429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27644691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27644793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27644940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27645101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27645252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27645384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27645385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27645386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27645387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27645388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27645401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27645518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27645755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27645898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27646108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27646264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27646400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27646462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27646479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27646522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27646525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27646831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27646840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27646852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27646943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27646944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27646948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27646951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27647423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27647451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27647727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27647744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27647809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27648492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27648536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27648552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27648565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27648764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27648814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27648826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27649114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27649339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27649340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27649518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27649525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27649640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27649861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27650971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27651035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27651169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27651224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27651239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27651317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27651434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27651435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27651464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27651837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27652456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27652491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27652571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27653742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27654987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27655101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27655106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27655130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27655254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27655276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27655279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27655349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27655433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27655586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27655717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27655834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27655866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27655872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27655885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27656774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27656775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27656928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27656958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27657903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27658020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27658059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27658229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27658426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27658483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27658528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27658529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27658530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27658622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27658790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27658811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27658892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27658963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27659895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27660025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27660139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27660242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27660299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27660302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27660404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27660910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27660911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27661254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27661390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27661393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27662009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27662010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27662012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27662013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27662015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27662016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27662017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27662218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27662575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27662630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27662643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27662799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27662896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27663946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27664062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27664144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27664161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27664341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27664581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27664774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27664983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27665002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27665146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27665311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27665417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27665546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27665593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27665675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27665736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27665785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27665868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27666023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27666115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27666391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27666513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27666521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27666525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27666895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27666932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27667908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27668011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27668076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27668123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27668165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27668280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27668281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27668289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27668655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27668928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27669118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27669119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27669120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27669178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27669335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27669446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27669457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27669459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27669541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27669556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27669674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27670967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27671094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27671105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27671162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27671214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27671230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27671286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27671334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27671618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27671770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27671868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27671879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27672191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27672192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27672355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27672442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27672681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27673273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27673321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27673359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27673416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27673442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27673520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27673528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27673546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27673547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27673560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27673569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27673575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27673582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27673753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27676139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27676141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27676237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27676247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27676323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27676328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27676362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27676426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27676466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27676585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27676604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27676608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27676645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27676699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27677241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27677376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27677385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27677416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27677528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27677572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27677730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27677775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27677782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27677783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27677920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27678044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27678139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27678246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27678288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27678511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27678551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27679665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27679969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27680304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27680513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27680702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27681041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27681373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27681415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27681438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27681448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27681449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27681475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27681480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27681640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27681874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27682008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27682073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27682320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27682324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27682362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27682476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27682713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27682862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27682867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27682897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27683123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27683242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27683415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27683425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27683532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27683538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27683605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27683659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27683748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27683949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27683970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27684955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27685864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27686093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27686398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27686411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27686412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27686413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27686596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27686615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27686871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27687982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27688004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27688203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27688219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27688295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27688298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27689675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27690208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27690617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27690619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27690635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27690666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27691979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27691980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27691981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27691982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27691985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27691988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27691990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27691993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27692965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27693196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27693260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27693261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27693378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27693622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27693623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27693624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27693809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27693810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27693900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27693922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27693943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27694177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27694324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27694402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27694446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27694475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27694491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27694809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27694857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27694932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27694935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27694942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27694958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27694971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27694979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27695002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27695139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27695619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27695919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27695990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27696986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27697084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27697424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27697780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27697839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27697925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27698211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27698240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27698417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27699201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27699210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27699594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27699595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27699791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27699893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27699957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27699996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27700065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27701367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27701480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27701482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27701484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27701486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27701659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27701805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27701806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27701807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27701816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27702601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27702648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27702770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27702829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27702831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27703141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27703166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27703430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27704316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27704355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27704488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27704531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27704689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27704799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27705061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27705610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27706888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27707553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27707609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27707843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27707869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27708031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27708064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27708089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27708103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27708207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27708257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27708258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27708270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27708281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27708356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27708617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27708677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27708905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27709253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27709300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27709304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27709335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27709342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27709412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27709556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27709557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27709614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27709742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27709771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27709788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27710005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27710313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27710994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27711025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27711177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27711381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27711401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27711911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27711923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27712014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27712108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27712873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27712877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27712907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27712943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27712944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27712981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27713051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27713060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27713156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27713428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27713485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27713543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27713553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27713804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27714987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27715403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27716142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27716362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27716785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27716949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27717063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27717080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27717100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27717143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27717182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27717213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27717597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27717647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27717837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27717879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27718046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27718131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27718150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27718168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27718212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27718234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27718257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27718339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27718509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27718512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27718540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27719689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27720140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27720141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27720180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27720196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27720464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27720578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27720588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27720589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27720676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27720769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27721009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27721014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27721079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27721413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27721420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27721450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27721455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27721456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27721647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27721667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27721914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27722185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27722208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27722929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27722974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27722975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27722976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27722977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27722978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27722979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27722980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27722981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27722982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27722983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27723997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27724833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27724841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27724843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27724858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27724867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27724874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27724910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27724987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27725007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27725226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27725246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27725675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27725969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27726090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27726116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27726117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27726164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27726851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27726996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27727063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27727066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27727128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27727141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27727212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27727279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27727283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27727308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27727458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27727483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27727489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27727493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27727496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27728806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27729736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27730172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27730213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27730307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27730389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27730390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27730391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27730392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27730393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27730455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27730456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27730590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27730653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27730701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27731453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27731511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27731907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27731980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27732597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27732790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27732841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27732870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27732922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27732966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27733044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27733045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27733087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27733088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27733281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27733282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27733285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27733423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27733558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27733626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27733931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27733932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27734095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27734253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27734256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27734260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27734275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27734519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27734548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27734574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27734606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27734631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27735081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27735137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27735924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27735989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27735996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27736103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27736128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27736139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27736237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27736647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27736936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27737090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27737481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27737482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27737522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27737562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27737657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27737689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27737788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27737789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27738553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27738792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27738793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27738831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27738853 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27738999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27739628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27740537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27740618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27740687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27740740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27740892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27741046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27741050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27741576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27741936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27742859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27743978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27744024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27744029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27744030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27744089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27744115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27744301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27744503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27744568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27744625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27744717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27744723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27745550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27745560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27745567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27745630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27745682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27745691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27745702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27745839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27745870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27745948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27745968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27745971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27746019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27746091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27746144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27746145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27746509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27746510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27746701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27746912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27747139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27747140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27747307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27747447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27747893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27747908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27748001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27748080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27748194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27748376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27748412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27748504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27748533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27748659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27748680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27748759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27749004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27749025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27749129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27749157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27749196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27749233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27749339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27749340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27749341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27749352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27749354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27749361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27749837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27749838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27750057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27750058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27750317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27750369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27750371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27750394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27750502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27750516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27751173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27751189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27751191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27751197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27751253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27751610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27751709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27751753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27751760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27751862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27751867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27751932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27751933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27752081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27752182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27752739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27752810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27752814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27752873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27753622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27754992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27755019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27755058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27755296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27755297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27755299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27755301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27755302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27755303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27755304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27755306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27755655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27756565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27756566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27756576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27756577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27756590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27756591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27756592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27756753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27756792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27756812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27756834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27756852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27757300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27757489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27757715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27757716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27757784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27757801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27757968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27757971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27757981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27758026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27758133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27758693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27758780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27758882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27758885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27759947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27760082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27760112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27760312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27760710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27760768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27760769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27760773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27760779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27760780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27761783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27761843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27761878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27761951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27761979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27762066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27762083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27762091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27762102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27762272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27762630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27762676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27763996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27764056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27764968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27764974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27764978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27765980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27766140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27766149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27766458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27766550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27766651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27766736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27766989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27766992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27766998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27767028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27767177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27767400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27768887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27769854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27770308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27770334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27770378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27770501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27770595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27770596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27770602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27770844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27771980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27772531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27773987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27774584 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27774594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27774687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27774698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27774770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27774801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27774807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27774930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27775067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27775068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27775069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27775070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27775076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27775550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27775813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27775826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27776247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27776269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27776374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27776446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27776519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27776521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27776546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27776794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27776835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27776933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27776982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27776983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27777141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27777180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27777181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27777310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27777312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27777337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27777418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27777560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27777889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27778163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27778203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27778204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27778205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27778295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27778296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27778310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27778340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27778372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27778477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27778524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27778640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27778761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27779091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27779342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27779422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27779443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27779558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27779655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27779857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27779995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27780196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27780308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27780725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27780826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27780858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27780867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27781109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27781296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27781363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27781382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27781403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27782117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27782120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27782121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27782134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27782349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27782828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27782940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27782944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27782947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27782948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27782986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27782990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27782993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27783880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27784054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27784136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27784313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27784617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27784619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27784625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27784626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27784677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27784688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27784745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27784771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27784810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27784829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27784839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27785529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27785561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27785562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27785588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27785655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27785709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27785710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27785885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27786307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27786425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27786436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27786496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27786511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27787958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27788960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27789799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27790837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27790856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27790910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27790917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27790973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27791108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27791164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27791231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27791233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27791279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27792469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27792660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27792862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27792866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27793974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27794024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27794035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27794041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27794045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27794123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27794124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27794141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27794296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27794417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27794453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27794454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27794486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27794487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27794554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27795877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27796843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27797941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27798941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27799005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27799046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27799157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27799201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27799212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27799214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27799219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27799292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27799317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27799330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27799343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27799344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27799345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27799366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27800497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27800600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27800663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27801518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27801938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27802963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27803067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27803105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27803106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27803121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27803151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27803159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27804005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27804026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27804033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27804042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27804126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27804886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27804905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27804907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27804910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27804911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27804963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27804964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27804966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27805237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27805454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27805617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27805736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27805756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27805834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27805954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27806993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27807995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27808325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27808403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27808543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27808568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27808576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27809454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27809455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27809462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27809615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27809947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27809950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27810122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27810197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27810217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27810329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27810390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27810448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27810464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27810558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27810802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27810992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27810993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27811168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27811267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27811288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27811290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27811305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27811320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27811335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27811627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27811947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27812541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27812554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27812570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27812681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27812696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27812776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27812777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27812809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27812888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27812889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27812905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27812927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27813023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27813024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27813042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27813245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27813264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27813296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27813693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27813725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27813829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27814138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27814565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27814566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27814632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27814956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27815868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27816956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27817005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27817095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27817123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27817160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27817183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27817191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27817201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27817244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27817301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27817853 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27817856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27818081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27818134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27818218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27818260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27818261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27818306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27818436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27818489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27818507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27818534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27818602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27818721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27818727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27819060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27819112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27819151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27819215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27819220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27819319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27819658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27819661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27819675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27820602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27820604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27820669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27820797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27820802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27820805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27820808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27820809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27820907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27821905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27822858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27823919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27824019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27824052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27824333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27824491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27824607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27824637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27825892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27826188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27826369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27826616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27826617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27826620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27826622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27826623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27826624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27826625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27826775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27826877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27827389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27827522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27827529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27827557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27827558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27827562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27828320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27828763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27828767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27828800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27828815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27828963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27828991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27829081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27829272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27829472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27829517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27829518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27829606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27829937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27829939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27829940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27830057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27830087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27830364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27830409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27830446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27830575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27830576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27830634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27830704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27830782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27831498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27831568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27831904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27831966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27832941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27833003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27833456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27833569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27833665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27834793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27835926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27836216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27836630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27836638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27836716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27836791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27836845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27836846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27836847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27836848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27836849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27837684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27837711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27837918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27837968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27838951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27839521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27839650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27839683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27839838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27839907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27839908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27839909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27839910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27839931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27839971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27840065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27840109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27840130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27840157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27840204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27840301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27840307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27840321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27840332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27840425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27840779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27841880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27842066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27842068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27842248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27842327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27842355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27842541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27842554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27842572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27842618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27842985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27843019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27843029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27843030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27843032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27843033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27843034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27843035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27843130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27843138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27843140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27843141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27843292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27844110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27844174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27844229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27844236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27844328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27844330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27844436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27844441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27845035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27845056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27845237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27845256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27845339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27845352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27845378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27845421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27845527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27845659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27845856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27845867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27845912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27845927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27846892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27847981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27848952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27849402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27849440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27849456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27849575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27849583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27849632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27851669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27851956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27852957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27853134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27853136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27853650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27853888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27853898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27853990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27854363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27854517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27855285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27855485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27855536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27855546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27855564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27855847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27855970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27856957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27857972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27857974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27858965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27859023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27859027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27859240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27859335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27859428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27859480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27859490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27859501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27859621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27859699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27859834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27859847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27859859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27859923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27860832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27861932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27862976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27863924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27864268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27864305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27864348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27864587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27864628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27864641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27864656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27864729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27864882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27865013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27865021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27865089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27865152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27865451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27865452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27865740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27865741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27865763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27866116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27866300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27866321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27866340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27866367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27866371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27866410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27866420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27866470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27866747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27866837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27866902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27866997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27867051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27867194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27867199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27867638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27867702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27868050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27868105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27868158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27868166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27868387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27869042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27869292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27869302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27869527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27869529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27869556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27869615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27869805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27869819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27869828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27869986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27869994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27870922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27871154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27871183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27871185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27871221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27871367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27871515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27872089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27872201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27872258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27872269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27872321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27872430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27872435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27872438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27872447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27872477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27872580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27872812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27873272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27873291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27873292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27873557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27874009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27874088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27874185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27874231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27874263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27874830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27874832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27874975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27874976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27874977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27875304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27875379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27875418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27875903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27876812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27878918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27879982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27880041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27880664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27880665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27880666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27880667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27880668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27880759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27880818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27880915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27881028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27881167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27881397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27881469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27881578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27881733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27881855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27881866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27882293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27882405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27882407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27882448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27882688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27882690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27882923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27883198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27883997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27884990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27885969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27886959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27887629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27887640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27887642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27887696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27887864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27887865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27887866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27887867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27887998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27888001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27888059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27888090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27888133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27888344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27888415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27888419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27888452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27888550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27888568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27888621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27888623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27889917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27890280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27890459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27890547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27890594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27890602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27890637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27890653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27890720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27890913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27890919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27890929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27890930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27891153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27891206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27891571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27891576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27891578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27891726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27891831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27892713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27892717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27892721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27892775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27892803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27892813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27892823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27892953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27892959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27893087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27893135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27893231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27893279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27893358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27893625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27893716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27893897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27893926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27893927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27893966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27894037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27894165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27894209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27894236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27894709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27894732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27894734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27894876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27894877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27894881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27894938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27895015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27895545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27895587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27896278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27896398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27896421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27896432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27896488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27896567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27896597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27896787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27896810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27896827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27896893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27896897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27896923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27896946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27897169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27897419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27897965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27898741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27899808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27900999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27901490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27902408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27902489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27902502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27902555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27902840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27902846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27902865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27902880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27902884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27902927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27903917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27904156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27904234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27904237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27904877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27904969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27904976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27905406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27905419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27906949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27907033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27907213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27908095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27908269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27908308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27908309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27908529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27908627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27908645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27908735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27908768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27908769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27908788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27908976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27909071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27909217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27909219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27909221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27909306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27909340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27909574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27909815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27909854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27909891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27909976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27909988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27910046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27910091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27910092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27910126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27910181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27910247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27910714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27910852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27910944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27910950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27910961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27911363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27911394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27911437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27911458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27911694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27911695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27911754 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27912035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27913997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27914971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27915024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27915077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27915170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27915232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27915373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27915488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27916216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27916265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27916488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27916529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27916530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27916618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27916636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27916740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27916910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27916940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field VersionID in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field VersionDate in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27909574 AND pmid_version = 2 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27917408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27917442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27917464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27917515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27917541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27917613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27917942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27918772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27919103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27919107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27919158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27919305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27919315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27919448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27919566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27919572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27919598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27919620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27919627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27919685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27919730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27919744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27920058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27920155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27920210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27920217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27920252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27920253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27920255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27920257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27920260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27920270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27920364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27920976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27921160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27921197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27921263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27921351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27921370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27922918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27923964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27924822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27925153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27925199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27925203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27925207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27925266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27925280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27925325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27925502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27925794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27925859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27926996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27927254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27927262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27927268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27927648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27927649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27927651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27927653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27927654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27927655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27927756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27927766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27927767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27927768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27927979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27928051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27928404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27928633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27928670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27928728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27928742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27928874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27929034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27929089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27929112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27929114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27929204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27929372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27929521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27929525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27929526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27929672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27929695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27929923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27929925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27929930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27930885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27931075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27931134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27931250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27931347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27931532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27931533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27931534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27931535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27931536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27931610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27931825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27932800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27933468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27933469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27933471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27933472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27933473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27933548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27933579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27933650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27933728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27933753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27933784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27933896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27934341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27934356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27934701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27934705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27934723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27934776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27934860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27934861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27934966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27934977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27935974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27936709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27937005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27937735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27938378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27938445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27938793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27938795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27938796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27938797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27938798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27938799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27938800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27938801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27938802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27938803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27939898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27940949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27941872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27942198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27942596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27942609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27942611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27942674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27942693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27942766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27942789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27942938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27943687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27951595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27951637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27951734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27955842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27955882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27956930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27957641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27957642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27957665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27957705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27957725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27957806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27958615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27958677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27958682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27958684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27958685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27959968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27960079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27960086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27960087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27960258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27960515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27964826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27964878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27964879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27964909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27964910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27964911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27964912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27964914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27964952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27964953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27964972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27965424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27966025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27966400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27966536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27966548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27966553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27966555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27966556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27966789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27966906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27966961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27967206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27967213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27967215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27967239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27967242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27967291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27967294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27968725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27968789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27969004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27973930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27974799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27975236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27975269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27975270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27975271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27975272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27975273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27975274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27975275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27975276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27975277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27976517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27976602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27976973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27976975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27976984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27977001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27977006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27977007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27977115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27977118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27977123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27977135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27977168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27977283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27977543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27977737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27977891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27978891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27979997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27980662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27981867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27982039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27982414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27982421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27982423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27982489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27982511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27982663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27982699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27982708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27982717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27983786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27983845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27983956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984584 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27984724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27986990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27987016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27987021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27987033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27987061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27987086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27987181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27987329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27987330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27987359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27987360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27987361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27987381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27987388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27987528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27988875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27989953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27990813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27991931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27992998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993584 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27993968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27994947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27995937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27996096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27996099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27996189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27996310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27996350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27996380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27996967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27997855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27998997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27999094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27999177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27999178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27999179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27999180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27999182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27999183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27999427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27999428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27999429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27999430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27999444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27999682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 27999936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28000963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28001046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28001123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28001292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28001351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28001376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28001427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28001467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28001490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28002976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28003835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28004988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28005762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28006055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28006059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28006082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28006701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28006795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28006796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28006797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28006798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28006799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28006800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28006801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28006802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28006851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28007984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28008921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28009782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28010161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28010729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28010957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28011893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28012941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28013522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28017933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28018608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28018706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28018927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28018944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28018987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28019021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28019028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28019639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28019641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28019642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28019669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28019685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28024998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28025975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28026921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28027975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28028853 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28029918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28030374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28030702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28030713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28030724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28030796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28031485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28032990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28033605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28034922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28035934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28036409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28038345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28038402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28038451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28038504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28038678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28038679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28038903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28038940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28038965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28038973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28038974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28039929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040754 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28040770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28041980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28042891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28043009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28043010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28043049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28043097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28043194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28043455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28043765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28043870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28043948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28043996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28044466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28045779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28046006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28048948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28048964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28049003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28049022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28049147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28049199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28049292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28049548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28049556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28049575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28049648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28049714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28049831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28049842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28049848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28050119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28050274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28050567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28050576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28050690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28050694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28050750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28050781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28050783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28050784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28050786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28050854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28051947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28052967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053754 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28053761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28054941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28055980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28056880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28057415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28057419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28057425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28057426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28057442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28057580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28057601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28057704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28057705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28057717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28057823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28057892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28058815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28059996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28060945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28061004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28061015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28061391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28061469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28061474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28061943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28062837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28063942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28064023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28064046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28064371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28064438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28064466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28064515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28064525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28065984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28066631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28066643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28066876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28066981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28067978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28068909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28069936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28070999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28071978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28072802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28073927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28074648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28075609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28076298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28076299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28076302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28076303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28076307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28076311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28076319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28076345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28076654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28076662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28076709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28076721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28076762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28076764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28077877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28078966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28079948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28080053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28080106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28080261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28080264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28080305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28081997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28082001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28082022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28082060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28082101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28082178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28082337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28082351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28082352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28082518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28082529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28082594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28082595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28082722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28082822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28083972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28084887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28085997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28086088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28086091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28086115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28086116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28086118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28086162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28086857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28087950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28088996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28089959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28090079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28090080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28090081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28090130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28090214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28090219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28090556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28090637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28090670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28090701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28091804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28091862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28091879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28092943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28093971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28094954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28095904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28096973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28097825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28098915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28099989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28100911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28101400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28101687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28101705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28101734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28101740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28101746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28101856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28102995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28103145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28103157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28103183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28103233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28103435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28103443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28103680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28103712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28103714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28103841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28104911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28105248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28105576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28105679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28105746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28105803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28105906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28106894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28107025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28107166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28107167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28107170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28107171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28107180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28107208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28107251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28107274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28107353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28107630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28107692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28108020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28108021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28108194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28108350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28108359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28108393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28108474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28108545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28108574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28108673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28108783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28108837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28108908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28108942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28109973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28110020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28110028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28110044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28110095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28110162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28110362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28110441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28110805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111853 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28111998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28112988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28113063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28113129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28113211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28113212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28113310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28113325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28113653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28113994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28114880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28115996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28116172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28116239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28116490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28116589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28116591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28116593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28116709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28116750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28116768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28116795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28116814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28117940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28118010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28118111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28118146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28118241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28118265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28118616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28118728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28118729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28118980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28119060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28119061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28119063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28119131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28119179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28119334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28119347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28119351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28119368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28119488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28119529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28119571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28119990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28120043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28120296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28120397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28120422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28120452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28120457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28120616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28120737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28120784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28120833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28121903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28122986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28123166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28123179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28123181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28123189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28123364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28123722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28124999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28125954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28126970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28127990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28128988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28129989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28130020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28130021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28130033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28130039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28130343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28130382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28130495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28130738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28130744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28130830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28130914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28131901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28132972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28133653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28133717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28133728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28133742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28133767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28133807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28133890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28133963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28133987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28134012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28134024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28134073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28134074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28134075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28134391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28134463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28134510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28134572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28134947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28135847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28137231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28137371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28137449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28137749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28137785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28137791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28137830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28137914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28137979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28137982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28138970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28139929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28140454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28140568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28140720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28140742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28140754 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28141486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28141765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28141781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28141783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28141930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28142039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28142084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28142128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28142212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28142231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28142384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28143670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28143693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28143785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28143794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28143899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28143956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28143977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28143978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28143979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28143980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28143981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28143982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28143983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28143984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28144000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28144001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28144003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28144007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28144008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28144683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28144778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28144793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28144829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28144991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28144998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28145014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28145099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28145424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28145514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28145547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28145590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28145684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28145723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28145799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28146152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28146230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28146370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28146470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28146471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28146472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28146474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28146477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28146542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28146663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28146673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28147208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28147271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28147309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28147345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28147346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28147432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28148226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28148530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28148532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28148729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28148777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28149992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28150041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28150066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28150121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28150231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28150279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28150281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28150282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28150347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28150367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28150387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28150400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28150501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28150897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28151989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28152664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28153492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28153493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28153611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28153714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28153778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28153957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28154973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28155817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28156011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28156017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28156107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28156152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28156153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28156155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28157149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28157152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28157181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28157257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28157355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28157391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28157422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28157470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28157476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28157692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28157786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28158964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28159992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28160039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28160073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28160140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28160314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28160318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28160404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28160445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28160505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28160543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28160562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28160610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28160662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28160663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28160769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28161120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28161307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28161387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28161554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28161556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28161688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28161700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28161714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28161730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28161775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28161793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28161886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28162027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28162137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28162895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28162954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28162969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28162975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28163987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28164170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28164200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28164228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28164240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28164279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28164283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28164365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28164391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28165873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28166814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28167677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28168996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28169095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28169112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28169129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28169154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28169191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28169202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28169292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28169492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28169875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28169914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28169915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28170388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28171570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28171582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28171583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28171663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28171699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28171705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28171706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28171710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28171737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28171802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28172500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28173048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28173125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28173167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28173168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28173619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28173952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28174896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28175317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28175318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28175321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28175324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28175989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28176517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28177123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28177130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28177137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28177187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28177189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28177270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28177325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28177478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28177632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28177851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28177981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28178750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28179853 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28180068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28180075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28180079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28180080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28180082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28180127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28180261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28180270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28180294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28180301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28180927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28181961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28182085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28182087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28182101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28182268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28182296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28182310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28182413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28182772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28182979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28183993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28184040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28184914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28184915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28184917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28184918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28184920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28184922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28184926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28184930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28184932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28184937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28184939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28184940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28185952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28186098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28186323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28186421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28186516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28186644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28186830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28186882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28186904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28187009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28187092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28187129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28187130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28187142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28187202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28187226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28187291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28187344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28187705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28187706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28187905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28187960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28188998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28189037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28189201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28189357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28189400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28189459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28189539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28189577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28189592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28189644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28189705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28189970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28189991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28190970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28191893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28192979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28193065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28193153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28193300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28193519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28193579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28193595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28193624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28193721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28193907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28194851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28195989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28196977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28197983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28198639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28199991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28200020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28201512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28201584 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28201726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28201840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28201845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28201868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28201989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28201991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28202961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28203529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28203531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28203606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28203611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28204185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28204477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28204482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28204501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28204504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28204529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28204611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28204859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28204945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28204958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28204968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28204973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28204974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28205616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28206673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28206704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28206740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28206741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28206778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28206779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28207982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28208006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28208014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28208029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28209989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28210971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28211968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28212051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28212054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28212069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28212119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28212230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28212524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28212535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28212607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28212689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28212691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28212757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28212879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28212880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28213979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28214959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28215900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28216644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28217041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28217555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28217782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28217868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28217896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28217931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28217939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28218995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28219015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28219074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28219080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28219340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28219483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28219648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28219691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28219896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28219927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28219928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28219929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28219962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28219987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28220998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28221101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28221171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28221200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28221668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28221724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28221767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28221772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28221775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28221990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28222015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28222038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28222205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28222211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28222212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28222219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28222226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28222232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28222255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28222267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28222268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28222269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28222337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28222989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28223034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28223085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28223366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28223367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28223369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28223370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28223407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28223445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28223929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28223985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28224966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28225791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28226190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28226242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28226299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28228978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28229923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28230907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28231072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28231240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28231241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28231242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28231244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28231247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28231248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28231415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28231434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28231567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28231688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28231689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28231707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28231716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28232979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28233897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28234022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28234211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28234257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28234353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28234356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28234359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28234577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28234660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28234669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28234949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28235586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28235591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28235681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28235703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28235706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28235707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28235708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28235711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28235762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28235778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28235886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28235888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28236134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28236172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28236173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28236253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28236254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28236255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28236279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28236448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28236511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28236733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28236734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28237053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28237256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28237397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28237425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28237458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28237459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28237741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28237763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28237807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28237856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28237897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238754 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28238992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28239984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28240295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28240554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28240601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28240602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28240604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28240605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28240606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28240607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28240702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28240769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28240772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28240813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28240870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28241894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28242034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28242293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28242433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28242479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28242494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28242537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28242566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28242567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28242652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28242756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28242757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28243994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28244955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28245867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28246002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28246139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28246185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28246192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28246193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28246202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28246237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28246352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28246354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28246381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28247992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28248126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28248413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28248416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28248417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28248418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28248437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28248456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28248551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28248593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28248628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28248693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28248923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28248987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28249067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28249127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28249174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28249175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28249176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28249362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28249640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28249660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28249764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28249783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28249939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28249984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28249985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28249986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28250003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28250005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28250029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28250055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28250113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28250135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28250152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28250411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28250422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28250466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28250593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28251935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28252040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28252047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28252213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28252214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28252220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28252222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28252665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28252842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28252959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28253077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28253430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28253536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28253640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28253932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28254874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28255935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28256783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28257943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28258936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28259048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28259093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28259571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28259576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28259604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28259628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28259710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28259779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28259787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28260182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28260737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28260802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28261998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28262022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28262088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28262327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28262328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28262503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28262770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28262975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28263976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28264986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28265959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28266048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28266275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28266594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28266682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28266786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28266816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28266820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28266821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267853 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28267893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28268990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28269980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270584 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28270984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28271953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272754 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28272989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28273775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28274984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28275927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28276089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28276100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28276128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28276542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28276596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28276808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28276997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28276999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28277901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28278732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28279985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28280052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28280056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28280090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28280107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28280205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28280206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28280233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28280239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28280241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28280242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28280272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28280686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28280865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28280919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28281938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28282744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28283968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28284015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28284099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28284476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28284683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28284715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28284716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28284717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28284718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28284719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28284774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28284805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28284808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28284938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28284954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28285980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28286983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28287914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28288992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28289963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28290003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28290155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28290225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28290242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28290265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28290464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28290593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28290738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28290758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28290782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28291990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28292986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28293017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28293021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28293035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28293802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28293821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28293885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28294062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28294174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28294245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28294277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28294319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28294416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28294470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28294671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28294686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28294708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28294709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28295980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28296973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28297161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28297184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28297426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28297573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28297577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28297579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28297620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28297679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28297716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28297718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28298625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28299286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28299384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28299390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28299400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28299401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28299562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28299623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28299624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28299727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28299802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28299881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28299982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28300774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28301969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28302937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28303906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28304401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28306757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28314946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28315968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28316772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28317065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28317067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28317128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28317204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28317210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28317223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28317233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28317238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28317511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28317551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28318958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28319951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28320989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28321919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28322980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28323998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28324988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28325931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28326014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28326433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28326507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28326563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28326567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28326589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28326668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28326775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28327993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28328938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28329211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28329251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28329434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28329704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28329758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28329865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28330985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28331859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28332995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28333760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28334975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28335927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28336814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28337987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28338965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28339814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28340903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28341943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28342989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28343960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28344919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28345999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28346869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28347885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28348959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28349077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28349235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28349236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28349241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28349292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28349293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28349380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28349405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28349411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28349464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28349507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28349559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28349583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28349784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28350989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28351971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28352079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28352106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28352118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28352266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28352502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28352869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28352901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28352916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28352970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28352974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28352980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28353658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28355978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28356571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28357916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28358929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28359988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28360680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28361896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28362947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28363985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28364979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28365979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28366942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28367078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28367546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28367606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28367631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28367676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28367724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28367726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28367750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28367763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28367855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28367874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28367907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28367931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28367932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28368970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28369960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28370985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28371917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28372998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28373700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28374969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28375840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28376978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28377877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28378944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28379944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28380718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28381867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28382995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28383925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28384791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28385920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28386983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28387999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28388923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28389912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28390949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28391974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28392985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28393011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28393303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28393332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28393355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28393364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28393382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28393430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28393434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28393485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28393524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28393671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28393739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28393830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394853 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28394935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28395954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28396983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28397998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28398928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28399974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28400802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28401998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28402987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28403030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28403182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28403217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28403683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28403726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28403746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28403854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28403859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404853 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28404980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28405926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28406842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28407736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28408937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28409851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28410994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28411949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28412900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28413158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28413159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28413160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28413312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28413771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28413777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28413856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28413859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28413883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28414998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28415980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28416816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28417999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28418933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28419907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420853 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28420985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28421833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28422977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28423990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28424988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28425996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28426992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28427998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28428983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28429924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28430983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28431971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28432987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28433999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28434932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28435996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28436986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28437904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28438998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28439973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28440963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28441780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442584 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28442790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28443362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28443607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28443644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28443679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28443816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28443841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28444974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445853 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28445987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28446800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28447871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28448998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28449979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28450744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28451966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28452988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28453998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28454929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28455968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28456895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457584 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28457994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28458952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28459977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28460869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28461709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28462989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28463949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28464995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28465497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28466965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28467989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28468997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28469473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28470985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28471928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28472949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28473952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28474989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28475946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28476951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28477970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28478958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28479670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28480997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28481997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28482927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28483982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28484075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28484090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28484098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28484114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28484127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28484129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28484147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28484148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28484149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28484150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28484953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28484955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28484972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28484999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28485987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28486942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28487995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28488975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28489988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490584 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28490820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28491342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28491874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28491905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28492924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28493966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28494973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28495991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28496006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28496011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28496012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28496013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28496017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28496026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28496027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28496133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28496146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28496147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28496177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28496283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28496298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28496398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28497926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28498974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28499980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28500992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28501969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28502981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28503329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28503705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28503713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28503726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28503750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28503751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28503769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28503858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28503904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28503916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28504997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28505980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28506999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28507790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28508960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28509951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28510998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28511946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28512998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28513873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28514885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28515433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28516957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28517174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28517553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28517947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28518057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28518170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28518171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28518172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28518173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28518218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28518477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28519900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28520986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28521821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28522753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28523001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28523392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28523402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28523408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28523409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28523445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28523532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28523572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28523624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28523638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28523727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28523961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28524896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525754 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28525994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28526957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28527916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28528935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28529527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28530841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28531914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28532207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28532230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28532253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28532289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28532601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28532602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28532624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28532625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28532665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28533441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28534993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28535982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28536998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28537962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28538838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28539666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28540999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28541710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28542929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28543982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28544979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28545989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28546581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28547919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28548893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field EqualContrib in table MedlineCitation_Article_AuthorList_Author because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28549989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28550971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28551989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552584 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28552953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28553966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28554999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28555878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28556971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28557998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28558995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28559686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28560866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561754 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28561960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28562833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28564546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28564551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28564599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28564650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28564652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28564656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28564658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28564742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28564743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28564745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28565730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28566617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28567254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28567279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28567280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28567334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28567506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28567513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28567546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28567703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28567714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28568605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28568607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28568708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28568813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28568901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28568966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28568969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28569997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28570953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28571994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28572588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28573990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28574983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28575923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576082 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576754 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28576981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28577997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28578992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28579845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28580980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28581890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28582999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28583997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584113 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584125 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28584941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585109 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28585967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28586923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587126 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587179 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587181 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28587984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588104 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28588765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28589998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28590999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28591980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28592989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28593997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594917 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28594986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595853 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28595999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596105 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596120 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596150 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28596988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597754 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597911 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28597952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598426 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28598996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28599988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600151 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28600967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28601986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602267 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602422 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602904 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602913 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28602994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603086 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603162 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603163 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603170 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603175 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28603989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604169 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604584 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28604998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605161 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605907 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28605992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606304 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28606989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607064 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607068 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607072 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607085 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607087 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607090 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607103 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607111 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607112 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607114 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607288 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607909 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28607957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608123 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608584 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28608985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609106 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609283 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609450 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609456 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609459 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609461 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609463 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609469 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609476 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609477 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609478 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609480 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28609836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610902 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610910 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610916 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28610988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611039 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611344 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611423 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611466 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611509 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611517 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611522 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611528 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611580 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611583 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611584 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611591 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611592 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611593 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611594 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611595 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611596 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611597 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611598 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611604 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611605 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611607 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611608 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611609 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611610 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611612 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611617 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611618 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611619 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611620 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611627 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611628 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611630 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611658 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611665 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611670 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611678 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611679 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611693 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611695 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611696 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611697 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611699 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611730 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611735 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611737 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611744 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611747 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611754 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611774 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611775 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611777 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611778 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611780 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611784 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611839 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611840 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611850 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611853 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611857 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611876 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611877 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611878 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611879 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611881 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611882 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611885 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611886 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611890 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611891 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611892 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611897 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611898 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611899 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611900 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611901 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611925 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611926 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611927 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611929 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611933 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611935 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611936 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611937 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611938 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611939 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611940 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611942 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611945 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611947 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611964 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611965 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611967 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611968 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611971 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611972 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611975 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611976 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611977 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611979 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611980 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611981 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611982 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611983 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611984 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611985 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611990 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611995 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611996 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611997 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28611999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612001 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612003 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612004 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612006 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612007 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612010 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612013 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612017 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612018 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612020 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612034 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612035 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612038 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612046 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612049 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612054 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612059 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612060 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612061 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612067 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612176 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612177 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612424 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612468 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612611 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28612941 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613119 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613122 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613127 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613274 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28613974 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614050 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614051 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614083 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614225 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614237 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614253 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614376 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614394 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614410 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614411 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614412 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614413 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614415 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614417 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614420 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614590 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614733 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614789 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614798 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28614805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615022 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615023 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615025 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615041 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615042 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615045 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615047 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615053 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615055 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615057 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615073 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615152 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615154 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615156 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615157 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615158 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615159 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615280 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615416 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615616 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615656 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615659 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615668 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615791 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615920 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615930 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615969 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615978 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615986 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28615987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616096 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616101 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616131 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616132 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616133 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616135 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616137 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616138 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616139 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616140 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616141 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616142 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616143 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616144 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616145 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616146 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616147 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616245 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field NlmCategory in table MedlineCitation_OtherAbstract_AbstractText because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616250 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616395 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616397 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616398 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616399 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616400 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616401 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616402 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616403 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616404 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616407 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616427 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616428 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616431 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616434 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616439 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616441 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616442 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616444 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616446 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616447 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616452 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616453 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616454 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616458 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616487 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616489 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616494 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616496 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616498 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616500 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616501 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616503 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616532 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616534 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616535 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616536 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616537 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616538 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616539 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616540 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616544 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616551 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616552 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616554 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616555 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616556 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616560 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616563 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616564 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616566 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616567 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616569 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616577 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616946 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28616966 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617015 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617065 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617224 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617236 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617239 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617244 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617324 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617326 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617327 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617328 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617329 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617342 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617354 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617418 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617425 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617578 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617579 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617603 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617805 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617810 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617814 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617815 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617816 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617817 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617823 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617824 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617825 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617826 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617827 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617828 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617829 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617830 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617831 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617833 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617834 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617838 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617841 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617844 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617847 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617848 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617851 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617852 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617853 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617856 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617858 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617860 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617862 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617863 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617864 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617865 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617866 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617867 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617870 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617871 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617914 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617922 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617991 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28617998 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618115 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618148 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618215 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618233 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618266 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618269 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618488 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618772 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28618896 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619005 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619008 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619009 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619012 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619014 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619019 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619024 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619026 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619027 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619028 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619029 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619031 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619032 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619036 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619037 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619044 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619062 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619069 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619081 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619088 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619091 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619092 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619093 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619094 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619095 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619097 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619098 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619100 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619102 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619108 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619110 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619116 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619117 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619118 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619121 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619124 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619408 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619451 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619505 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619506 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619545 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619589 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619602 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619640 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619641 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619652 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619667 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619703 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619787 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619788 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619790 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619794 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619796 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619801 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619803 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619811 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619813 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619832 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619884 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619993 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28619994 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620011 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620030 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620033 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620040 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620071 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620074 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620075 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620076 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620077 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620078 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620079 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620089 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620099 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620155 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620160 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620164 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620165 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620171 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620178 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620187 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620191 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620217 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620234 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620238 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620243 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620460 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620462 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620525 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620530 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620808 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620812 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620869 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620872 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28620923 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621128 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621129 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621130 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621134 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621136 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621223 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621290 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621293 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621301 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621302 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621303 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621305 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621310 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621312 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621313 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621333 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621341 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621438 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621449 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621495 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621514 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621524 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621527 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621662 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621708 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621723 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621724 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621727 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621728 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621729 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621732 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621734 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621736 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621739 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621740 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621742 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621743 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621750 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621751 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621752 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621753 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621754 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621755 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621761 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621762 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621771 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621804 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621919 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621921 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621924 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621928 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621931 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28621943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622070 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622174 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622198 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622206 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622209 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622289 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622332 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622346 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622363 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622364 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622366 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622367 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622368 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622370 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622371 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622372 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622373 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622377 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622378 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622379 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622380 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622381 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622383 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622384 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622387 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622389 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622390 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622392 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622393 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622405 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622406 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622409 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622437 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622455 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622467 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622507 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622508 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622510 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622526 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622613 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622700 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622714 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622715 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622716 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622722 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622765 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622766 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28622973 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623084 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623167 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623172 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623173 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623180 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623182 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623183 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623184 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623185 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623241 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623247 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623271 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623272 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623279 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623284 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623292 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623295 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623300 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623307 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623308 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623309 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623314 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623315 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623317 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623318 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623319 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623320 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623321 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623322 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623323 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623325 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623330 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623331 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623334 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623335 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623336 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623337 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623338 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623339 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623343 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623349 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623365 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623396 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623433 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623445 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623474 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623490 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623491 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623633 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623634 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623635 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623636 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623637 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623638 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623644 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623647 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623649 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623663 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623664 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623741 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623757 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623758 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623873 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623874 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623883 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623888 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623894 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623903 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623905 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623912 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623932 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623934 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623943 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623944 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623970 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28623992 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624066 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624149 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624153 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624186 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624188 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624189 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624190 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624192 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624193 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624194 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624195 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624196 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624197 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624199 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624200 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624201 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624202 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624203 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624204 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624205 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624207 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624208 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624211 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624214 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624216 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624219 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624221 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624222 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624226 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624227 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624228 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624235 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624258 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624265 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624294 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624306 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624316 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624355 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624369 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624414 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624430 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624436 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624440 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624464 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624471 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624516 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624523 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624529 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624557 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624558 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624559 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624562 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624570 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624571 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624573 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624581 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624584 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624600 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624606 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624614 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624615 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624623 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624625 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624626 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624631 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624645 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624646 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624680 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624702 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624704 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624709 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624842 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624843 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624861 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624895 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624906 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624987 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_Article_DataBankList_DataBank_Order in table MedlineCitation_Article_DataBankList_DataBank_AccessionNumberList_AccessionNumber because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624988 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28624989 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625016 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625056 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625058 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625080 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625107 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625166 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625168 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625210 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625231 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625273 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625275 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625276 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625277 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625419 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625448 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625475 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625481 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625483 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625484 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625485 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625502 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625541 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625542 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625543 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625546 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625548 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625550 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625553 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625568 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625574 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625575 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625576 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625585 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625621 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625632 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625673 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625683 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625745 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625748 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625767 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625783 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625819 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625820 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625821 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625822 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625835 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625836 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625837 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625845 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625846 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625849 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625854 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625855 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625859 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625868 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625875 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625880 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625887 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625889 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625893 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625908 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625915 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625918 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625948 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625949 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625950 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625951 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625952 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625953 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625954 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625955 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625956 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625957 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625958 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625959 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625960 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625961 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625962 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625963 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28625999 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626000 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626002 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626021 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626043 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626048 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626052 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626063 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626212 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626213 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626218 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626220 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626229 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626230 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626232 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626240 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626242 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626246 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626248 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626249 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626251 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626252 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626254 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626255 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626256 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626257 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626259 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626260 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626261 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626262 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626263 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626264 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626268 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626270 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626278 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626281 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626282 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626285 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626286 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626287 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626291 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626296 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626297 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626298 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626299 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626311 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626340 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626345 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626347 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626348 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626350 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626351 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626352 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626353 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626356 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626357 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626358 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626359 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626360 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626361 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626362 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626374 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626375 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626382 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626385 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626386 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626388 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626391 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626421 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626429 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626432 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626435 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626443 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626457 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626465 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626470 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626472 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626473 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626479 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626482 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626486 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626492 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626493 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626497 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626499 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626504 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626511 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626512 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626513 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626515 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626518 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626519 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626520 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626521 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626531 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626533 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626547 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626549 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626561 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626565 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626572 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626582 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626586 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626587 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626588 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626599 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626601 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626622 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626624 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626629 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626639 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626642 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626643 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626648 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626650 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626651 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626653 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626654 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626655 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626657 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626660 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626661 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626666 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626669 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626671 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626672 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626674 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626675 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626676 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626677 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626681 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626682 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626684 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626685 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626686 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626687 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626688 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626689 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626690 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626691 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626692 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626694 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626698 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626701 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626705 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626706 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626707 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626710 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626711 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626712 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626713 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626717 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626718 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626719 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626720 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626721 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626725 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626726 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626731 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626738 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626746 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626749 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626756 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626759 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626760 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626763 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626764 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626768 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626769 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626770 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626773 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626776 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626779 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626781 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626782 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626785 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626786 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626792 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626793 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626795 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626797 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626799 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field CoiStatement in table MedlineCitation because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626800 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626802 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626806 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626807 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) Ignoring field MedlineCitation_KeywordList_Order in table MedlineCitation_KeywordList_Keyword because field is not in DB (meaning it wasn't encountered in the XML files before now) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM medcit_otherid WHERE pmid = 28626809 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:405) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.MedlineCitationParser.parseAndInjectIntoDB(MedlineCitationParser.java:67) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.analyse(MedlineParserMain.java:65) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:54) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43) java.sql.BatchUpdateException: Batch entry 0 DELETE FROM pmid_to_date WHERE pmid = 27259818 AND pmid_version = 1 was aborted. Call getNextException to see the cause. at org.postgresql.jdbc2.AbstractJdbc2Statement$BatchResultHandler.handleError(AbstractJdbc2Statement.java:2740) at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:346) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1891) at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1093) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:396) at org.postgresql.jdbc2.AbstractJdbc2Statement.executeBatch(AbstractJdbc2Statement.java:2889) at org.ohdsi.databases.ConnectionWrapper.setBatchMode(ConnectionWrapper.java:59) at org.ohdsi.medlineXmlToDatabase.PmidToDate.insertDates(PmidToDate.java:111) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.parseFolder(MedlineParserMain.java:55) at org.ohdsi.medlineXmlToDatabase.MedlineParserMain.main(MedlineParserMain.java:40) at org.ohdsi.medlineXmlToDatabase.MainClass.main(MainClass.java:43)